Very very interesting points WC.
I will still stick with my own theory though, since it makes
more sense to me

I guess only time will tell if we came
anywhere close to the plot.
Now, I am going to agree with you on the "Arch" is wrong
claim.
The ship was destroyed, it was not only broken in half but
also burning to a crisp after several explosions. Not a chance
the EMP would have been shot from there.
If you're talking about the other ship, well, maybe but
very unlikely, heres why:
It's important to remember that in the real world we are
simply biological beings. Electromagnetic waves have no
effect on us. Neo's MIND was changing, but not his body,
he didn't become metal all of the sudden and his vains
didn't use 0s and 1s instead of blood. There is nothing you
can tell me that will make me believe that NEO is biologically
turning into a robot and that electromagnetic waves can
screw him up.
I wanted to say something else, but I forgot. :confused: